From QED

Peter Koppstein

peak@princeton.edu
Bioinformatics Group
Lewis-Sigler Institute for Integrative Genomics
Campus Phone: (609) 258-9104

pkoppstein.tumblr.com

Contents 1 Bioinformatics Links 1.1 File formats 1.2 Databases 1.3 Browsers 1.4 URL Queries 1.5 In Progress 2 Programming 3 Talks 4 Course Tips 5 In Progress 5.1 No longer accessible 6 FCKeditor 7 Search Terms 8 Sharepoint 9 Roxen 10 WebShare 11 CSDE Development 12 Viewers 13 Links 14 External Links 15 Statistics 16 TODO 17 Google Analytics

Bioinformatics Links

File formats

• Category:Computer File Format
• UCSC FAQ
• GenBank Flat File Format
• RefSeq Accession Format

Databases

• GeneDB
• Diseases Database

Browsers

• JBrowse
• GBrowse
  • QED Guide: GBrowse
  • Java GBrowse

URL Queries

• Constructing a Web Link to the Entrez Database

In Progress

• HEFalMp Setup Manual
• Notes on Mercurial

• Bayesian Interaction Networks Software Projects
• HEFalMp Trac
• SPELL Tools Trac
  • SPELL Data Processing Pipeline (from GEO to PCL and DAB formats)
• GViz on Sourceforge

• Bitbucket

Programming

• Ruby
  • Treetop (Parsing Expression Grammars)

Talks

April 2006 

OIT/Collaborative Content Creation

December 5, 2006

Virtual Websites with MediaWiki and LAMP

June 20, 2007 

SPIN

December 2008 

Dojo

March 23, 2009 

Google Chrome

April 27, 2009 

JavaScript

November 18, 2011

Mercurial

Course Tips

• Tips

In Progress

• User:Peak/Repositories
• Talk:Test:Calendar‎
• http://mol-webdev4.princeton.edu/coller

No longer accessible

• http://isaacnewton.princeton.edu/tests/dojo/dynamicTags.html
• http://isaacnewton.princeton.edu/tests/booksInPrint.php
• http://isaacnewton.princeton.edu/tests/almagest/explore.html
• http://isaacnewton.princeton.edu/tests/dojo/almagestTree.html

FCKeditor

MediaWiki+FCKeditor Active Tickets

Search Terms

• QED

Sharepoint

• http://mysite.princeton.edu
• Digital Assets
  • DigitalX 2008

Roxen

• Resources
• Sandbox

WebShare

• Training Guide — includes sections on Xythos Drive and the wiki feature

CSDE Development

• http://mapglobe.csde.washington.edu/dev/extract.php

Viewers

• For presentation constructors and viewers, see Viewers

Links

• Project:MG/Browse
• MG/Test/CQ

External Links

• Email Quotas
• Almagest (almadevl)
• GIS digital maps server
• Shelfmarks of Princeton University Library
• http://etcweb.princeton.edu/asianart
• http://www-old.princeton.edu/cgi/map Campus Map
• http://www.princeton.edu/pr/visitors/images/park-map.pdf
• http://search3.webfeat.org/clients/princeton/princetonqs.asp
• BlackBoard test environment (i.p. ECO101_S2006)
• Personal Page
• http://del.icio.us
• Google Trends

Statistics

NUMBEROFARTICLES = 1,058 

the number of pages in the main namespace which contain a link and are not a redirect.

NUMBEROFPAGES = 10,387

NUMBEROFFILES = 3,900

TODO

• MG/Empires/Byzantine_EmpireV7
  • User:Peak/monobook.css

Google Analytics

Installed 20070910

To use, visit http://www.google.com/analytics

The admins are currently:

• perry@princeton.edu
• pkoppstein@gmail.com

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• User:Peak/20060608
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